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2004 McArdle Publications

Austin, C. P., Battey, J. F., Bradley, A., Bucan, M., Capecchi, M., Collins, F. S., Dove, W. F., Duyk, G., Dymecki, S., Eppig, J. T., Grieder, F. B., Heintz, N., Hicks, G., Insel, T. R., Joyner, A., Koller, B. H., Lloyd, K. C. K., Magnuson, T., Moore, M. W., Nagy, A., Pollock, J. D., Roses, A. D., Sands, A. T., Seed, B., Skarnes, W. C., Snoddy, J., Soriano, P., Stewart, D. J., Stewart, F., Stillman, B., Varmus, H., Varticovski, L., Verma, I. M., Vogt, T. F., von Melchner, H., Witkowski, J., Woychik, R. P., Wurst, W., Yancopoulos, G. D., Young, S. G., and Zambrowicz, B. The Knockout Mouse Project. Nat. Genet., 36: 921-924, 2004.

Barnard, R. J. O., Narayan, S., Dornadula, G., Miller, M. D., and Young, J. A. T. Low pH Is Required for Avian Sarcoma and Leukosis Virus Env-Dependent Viral Penetration into the Cytosol and Not for Viral Uncoating. J. Virol., 78: 10433-10441, 2004.

Bilger, A., Bennett, L. M., Carabeo, R. A., Chiaverotti, T. A., Dvorak, C., Liss, K. M., Schadewald, S. A., Pitot, H. C., and Drinkwater, N. R. A Potent Modifier of Liver Cancer Risk on Distal Mouse Chromosome 1: Linkage Analysis and Characterization of Congenic Lines. Genetics, 167: 859-866, 2004.

Boehme, K. W., and Compton, T. Innate Sensing of Viruses by Toll-Like Receptors. J. Virol., 78: 7867-7873, 2004.

Boehme, K. W., Singh, J., Perry, S. T., and Compton, T. Human Cytomegalovirus Elicits a Coordinated Cellular Antiviral Response via Envelope Glycoprotein B. J. Virol., 78: 1202-1211, 2004.

Bradfield, C. Genomics and Proteomics. Chem. Res. Toxicol., 17: 2, 2004.

Chen, K.-S., and Gould, M. N. Development of a Universal Gap Repair Vector for Yeast-Based Screening of Knockout Rodents. BioTechniques, 37: 383-388, 2004.

Compton, T. Receptors and Immune Sensors: The Complex Entry Path of Human Cytomegalovirus. Trends Cell Biol., 14: 5-8, 2004.

Dragan, Y. P., Sargent, L. M., Babcock, K., Kinunen, N., and Pitot, H. C. Alterations in Specific Gene Expression and Focal Neoplastic Growth During Spontaneous Hepatocarcinogenesis in Albumin-SV40 T Antigen Transgenic Rats. Mol. Carcinog., 40: 150-159, 2004.

Duellman, S. J., Thompson, N. E., and Burgess, R. R. An Epitope Tag Derived from Human Transcription Factor IIB That Reacts with a Polyol-Responsive Monoclonal Antibody. Protein Expr. Purif., 35: 147-155, 2004.

Feire, A. L., Koss, H., and Compton, T. Cellular Integrins Function as Entry Receptors for Human Cytomegalovirus via a Highly Conserved Disintegrin-Like Domain. Proc. Natl. Acad. Sci. USA, 101: 15470-15475, 2004.

Guengerich, F. P., Martin, M. V., McCormick, W. A., Nguyen, L. P., Glover, E., and Bradfield, C. A. Aryl Hydrocarbon Receptor Response to Indigoids In Vitro and In Vivo. Arch. Biochem. Biophys., 423: 309-316, 2004.

Haigis, K. M., Hoff, P. D., White, A., Shoemaker, A. R., Halberg, R. B., and Dove, W. F. Tumor Regionality in the Mouse Intestine Reflects the Mechanism of Loss of Apc Function. Proc. Natl. Acad. Sci. USA, 101: 9769-9773, 2004.

Hammerschmidt, W., and Sugden, B. Epstein-Barr Virus Sustains Burkitt’s Lymphomas and Hodgkin’s Disease. Trends Mol. Med., 10: 331-336, 2004.

Kalejta, R. F. Human Cytomegalovirus pp71: A New Viral Tool to Probe the Mechanisms of Cell Cycle Progression and Oncogenesis Controlled by the Retinoblastoma Family of Tumor Suppressors. J. Cell. Biochem., 93: 37-45, 2004.

Kelley, M. R., Tompkinson, A. E., Williams, K. J., Drinkwater, N. R., and Fung, V. A. Frontiers of Mutagenesis and DNA Repair: A Workshop. Cancer Res., 64: 3357-3360, 2004.

Kirmizis, A., and Farnham, P. J. Genomic Approaches That Aid in the Identification of Transcription Factor Target Genes. Exp. Biol. Med., 229: 705-721, 2004.

Kirmizis, A., Bartley, S. M., Kuzmichev, A., Margueron, R., Reinberg, D., Green, R., and Farnham, P. J. Silencing of Human Polycomb Target Genes Is Associated with Methylation of Histone H3 Lys 27. Genes Dev., 18: 1592-1605, 2004.

Klucking, S., and Young, J. A. T. Amino Acid Residues Tyr-67, Asn-72, and Asp-73 of the TVB Receptor Are Important for Subgroup E Avian Sarcoma and Leukosis Virus Interaction. Virology, 318: 371-380, 2004.

Lam, N., Sandberg, M. L., and Sugden, B. High Physiological Levels of LMP1 Result in Phosphorylation of eIF2a in Epstein-Barr Virus-Infected Cells. J. Virol., 78: 1657-1664, 2004.

Lavrrar, J. L., and Farnham, P. J. The Use of Transient Chromatin Immunoprecipitation Assays to Test Models for E2F1-specific Transcriptional Activation. J. Biol. Chem., 279: 46343-46349, 2004.

Lim, K.-i., Narayan, S., Young, J. A. T., and Yin, J. Effects of Lipid Rafts on Dynamics of Retroviral Entry and Trafficking: Quantitative Analysis. Biotechnol. Bioeng., 86: 650-660, 2004.

Liu, B. Y., McDermott, S. P., Khwaja, S. S., and Alexander, C. M. The Transforming Activity of Wnt Effectors Correlates with Their Ability to Induce the Accumulation of Mammary Progenitor Cells. Proc. Natl. Acad. Sci. USA, 101: 4158-4163, 2004.

Liu, N., Ji, L., Maguire, M. L., and Loeb, D. D. cis-Acting Sequences That Contribute to the Synthesis of Relaxed-Circular DNA of Human Hepatitis B Virus. J. Virol., 78: 642-649, 2004.

Lopper, M., and Compton, T. Coiled-Coil Domains in Glycoproteins B and H Are Involved in Human Cytomegalovirus Membrane Fusion. J. Virol., 78: 8333-8341, 2004.

Maeda, T., Alexander C. M., and Friedl, A. Induction of Syndecan-1 Expression in Stromal Fibroblasts Promotes Proliferation of Human Breast Cancer Cells. Cancer Res., 64: 612-621, 2004.

Manoharan, H., Babcock, K., and Pitot, H. C. Changes in the DNA Methylation Profile of the Rat H19 Gene Upstream Region During Development and Transgenic Hepatocarcinogenesis and Its Role in the Imprinted Transcriptional Regulation of the H19 Gene. Mol. Carcinog., 41: 1-16, 2004.

Matsumoto, K., Leggatt, G. R., Zhong, J., Liu, X., de Kluyver, R. L., Peters, T., Fernando, G. J. P., Liem, A., Lambert, P. F., and Frazer, I. H. Impaired Antigen Presentation and Effectiveness of Combined Active/Passive Immunotherapy for Epithelial Tumors. J. Natl. Cancer Inst., 96: 1611-1619, 2004.

Melikyan, G. B., Barnard, R. J. O., Markosyan, R. M., Young, J. A. T., and Cohen, F. S. Low pH Is Required for Avian Sarcoma and Leukosis Virus Env-Induced Hemifusion and Fusion Pore Formation but Not for Pore Growth. J. Virol., 78: 3753-3762, 2004.

Narayan, S., and Young, J. A. T. Reconstitution of Retroviral Fusion and Uncoating in a Cell-Free System. Proc. Natl. Acad. Sci. USA, 101: 7721-7726, 2004.

Newton, M. A., Noueiry, A., Sarkar, D., and Ahlquist, P. Detecting Differential Gene Expression with a Semiparametric Hierarchical Mixture Method. Biostatistics, 5: 155-176, 2004.

Oberley, M. J., Tsao, J., Yau, P., and Farnham, P. J. High-Throughput Screening of Chromatin Immunoprecipitates Using CpG-Island Microarrays. In: C. D. Allis and C. Wu (Eds.), Methods in Enzymology, Vol. 376: Chromatin and Chromatin Remodeling Enzymes, Part B, pp. 315-334. Elsevier Academic Press, 2004.

Ostrow, K. M., and Loeb, D. D. Underrepresentation of the 3' Region of the Capsid Pregenomic RNA of Duck Hepatitis B Virus. J. Virol., 78: 2179-2186, 2004.

Ostrow, K. M., and Loeb, D. D. Chimeras of Duck and Heron Hepatitis B Viruses Provide Evidence for Functional Interactions between Viral Components of Pregenomic RNA Encapsidation. J. Virol., 78: 8780-8787, 2004.

Phan, D., Cheng, C.-J., Galfione, M., Vakar-Lopez, F., Tunstead, J., Thompson, N. E., Burgess, R. R., Najjar, S. M., Yu-Lee, L.-Y., and Lin, S.-H. Identification of Sp2 as a Transcriptional Repressor of Carcinoembryonic Antigen-Related Cell Adhesion Molecule 1 in Tumorigenesis. Cancer Res., 64: 3072-3078, 2004.

Schaeffer, A. J., Nguyen, M., Liem, A., Lee, D., Montagna, C., Lambert, P. F., Ried, T., and Difilippantonio, M. J. E6 and E7 Oncoproteins Induce Distinct Patterns of Chromosomal Aneuploidy in Skin Tumors from Transgenic Mice. Cancer Res., 64: 538-546, 2004.

Schwartz, M., Chen, J., Lee, W.-M., Janda, M., and Ahlquist, P. Alternate, Virus-Induced Membrane Rearrangements Support Positive-Strand RNA Virus Genome Replication. Proc. Natl. Acad. Sci. USA, 101: 11263-11268, 2004.

Tessier, C. R., Doyle, G. A., Clark, B. A., Pitot, H. C., and Ross, J. Mammary Tumor Induction in Transgenic Mice Expressing an RNA-Binding Protein. Cancer Res., 64: 209-214, 2004.

Thomae, T. L., Glover, E., and Bradfield, C. A. A Maternal Ahr Null Genotype Sensitizes Embryos to Chemical Teratogenesis. J. Biol. Chem., 279: 30189-30194, 2004.

Thompson, N. E., Foley, K. M., and Burgess, R. R. Antigen-Binding Properties of Monoclonal Antibodies Reactive with Human TATA-Binding Protein and Use in Immunoaffinity Chromatography. Protein Expr. Purif., 36: 186-197, 2004.

Townsend, M. J., Weinmann, A. S., Matsuda, J. L., Salomon, R., Farnham, P. J., Biron, C. A., Gapin, L., and Glimcher, L. H. T-bet Regulates the Terminal Maturation and Homeostasis of NK and Va14i NKT Cells. Immunity, 20: 477-494, 2004.

Walisser, J. A., Bunger, M. K., Glover, E., and Bradfield, C. A. Gestational Exposure of Ahr and Arnt Hypomorphs to Dioxin Rescues Vascular Development. Proc. Natl. Acad. Sci. USA, 101: 16677-16682, 2004.

Walisser, J. A., Bunger, M. K., Glover, E., Harstad, E. B., and Bradfield, C. A. Patent Ductus Venosus and Dioxin Resistance in Mice Harboring a Hypomorphic Arnt Allele. J. Biol. Chem., 279: 16326-16331, 2004.

Wang, C.-Y., and Sugden, B. New Viruses Shake Old Paradigms. J. Clin. Invest., 113: 21-23, 2004.

Wild, J., and Szybalski, W. Copy-Control pBAC/oriV Vectors for Genomic Cloning. In: P. Balbas and A. Lorence (Eds.), Methods in Molecular Biology, Recombinant Gene Expression. Reviews and Protocols, Vol. 267, Chap. 10, pp. 145-154. Humana Press, Inc., 2004.

Wild, J., and Szybalski, W. Copy-Control Tightly Regulated Expression Vectors Based on pBAC/oriV. In: P. Balbas and A. Lorence (Eds.), Methods in Molecular Biology, Recombinant Gene Expression. Reviews and Protocols, Vol. 267, Chap. 11, pp. 155-167. Humana Press, Inc., 2004.

Xu, Y.-H., Lahvis, G., Edwards, H., and Pitot, H. C. Three-Dimensional Reconstruction from Serial Sections in PC-Windows Platform by Using 3D_Viewer. Comput. Methods Programs Biomed., 76: 143-154, 2004.

Yao, G., Craven, M., Drinkwater, N., and Bradfield, C. A. Interaction Networks in Yeast Define and Enumerate the Signaling Steps of the Vertebrate Aryl Hydrocarbon Receptor. PLoS Biol., 2:E65, 2004.

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