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2001 McArdle Publications

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Adkins, H. B., Blacklow, S. C., and Young, J. A. T. Two Functionally Distinct Forms of a Retroviral Receptor Explain the Nonreciprocal Receptor Interference among Subgroups B, D, and E Avian Leukosis Viruses. J. Virol., 75: 3520-3526, 2001.

Albert, T., Wells, J., Funk, J.-O., Pullner, A., Raschke, E.-E., Stelzer, G., Meisterernst, M., Farnham, P. J., and Eick, D. The Chromatin Structure of the Dual c-myc Promoter P1/P2 Is Regulated by Separate Elements. J. Biol. Chem., 276: 20482-20490, 2001.

Alexander, C. M., Selvarajan, S., Mudgett, J., and Werb, Z. Stromelysin-1 Regulates Adipogenesis during Mammary Gland Involution. J. Cell Biol., 152: 693-703, 2001.

Azoury-Ziadeh, R., Herd, K., Fernando, G. J. P., Lambert, P., Frazer, I. H., and Tindle, R. W. Low Level Expression of Human Papillomavirus Type 16 (HPV16) E6 in Squamous Epithelium Does Not Elicit E6 Specific B- or T-Helper Immunological Responses, or Influence the Outcome of Immunisation with E6 Protein. Virus Res., 73: 189-199, 2001.

Baumstark, T., and Ahlquist, P. The Brome Mosaic Virus RNA3 Intergenic Replication Enhancer Folds to Mimic a tRNA TyC-Stem Loop and Is Modified in Vivo. RNA, 7: 1652-1670, 2001.

Bittinger, M. A., and Bradfield, C. A. The Ah Receptor. Encyclopedia of Molecular Medicine, Vol. 1, pp. 265-266. New York: John Wiley & Sons, Inc., 2001.

Bradley, K. A., Mogridge, J., Mourez, M., Collier, R. J., and Young, J. A. T. Identification of the Cellular Receptor for Anthrax Toxin. Nature, 414: 225-229, 2001.

Bruening, E., and Sugden, B.  Herpesviruses. In: G. Stamatoyannopoulos, P. W. Majerus, R. M. Perlmutter, and H. Varmus (Eds.), The Molecular Basis of Blood Diseases, 3rd edition, pp. 951-967. Philadelphia: W. B. Saunders Co., 2001.

Bugni, J. M., Poole, T. M., and Drinkwater, N. R. The little Mutation Suppresses DEN-induced Hepatocarcinogenesis in Mice and Abrogates Genetic and Hormonal Modulation of Susceptibility. Carcinogenesis, 22: 1853-1862, 2001.

Burgess, R. R. Sigma Factors. In: S. Brenner and J. H. Miller (Eds.), Encyclopedia of Genetics, pp. 1831-1834. San Diego, CA: Academic Press, 2001.

Burgess, R. R., and Anthony, L. How Sigma Docks to RNA Polymerase and What Sigma Does. Curr. Opin. Microbiol., 4: 126-131, 2001.

Carstens, B. P., and Perry, M. E. Purification of a Fragment of MDM2 for Production of Polyclonal Antisera. Protein Expr. Purif., 21: 361-365, 2001.

Chen, J., Noueiry, A., and Ahlquist, P. Brome Mosaic Virus Protein 1a Recruits Viral RNA2 to RNA Replication through a 5' Proximal RNA2 Signal. J. Virol., 75: 3207-3219, 2001.

Cherkaoui-Malki, M., Meyer, K., Cao, W.-Q., Latruffe, N., Yeldandi, A. V., Rao, M. S., Bradfield, C. A., and Reddy, J. K. Identification of Novel Peroxisome Proliferator-Activated Receptor a (PPARa) Target Genes in Mouse Liver Using cDNA Microarray Analysis. Gene Expr., 9: 291-304, 2001.

den Boon, J. A., Chen, J., and Ahlquist, P. Identification of Sequences in Brome Mosaic Virus Replicase Protein 1a That Mediate Association with Endoplasmic Reticulum Membranes. J. Virol., 75: 12370-12381, 2001.

Divi, R. L., Dragan, Y. P., Pitot, H. C., and Poirier, M. C. Immunohistochemical Localization and Semi-quantitation of Hepatic Tamoxifen-DNA Adducts in Rats Exposed Orally to Tamoxifen. Carcinogenesis, 22: 1693-1699, 2001.

Dragan, Y. P., Nuwaysir, E., Sargent, L., Li, D.-H., Jordan, V. C., and Pitot, H. C. The Effects of Triphenylethylene Antiestrogens on Parameters of Multistage Hepatocarcinogenesis in the Rat. In: J. J. Li, S. A. Li, and J. R. Daling (Eds.), Hormonal Carcinogenesis III. Proceedings of the Third International Symposium, Chapter 9, pp. 124-135. New York: Springer-Verlag, 2001.

Duensing, S., Duensing, A., Flores, E. R., Do, A., Lambert, P. F., and Münger, K. Centrosome Abnormalities and Genomic Instability by Episomal Expression of Human Papillomavirus Type 16 in Raft Cultures of Human Keratinocytes. J. Virol., 75: 7712-7716, 2001.

Eberhardy, S. R., and Farnham, P. J. c-Myc Mediates Activation of the cad Promoter via a Post-RNA Polymerase II Recruitment Mechanism. J. Biol. Chem., 276: 48562-48571, 2001.

Frazer, I. H., De Kluyver, R., Leggatt, G. R., Guo, H. Y., Dunn, L., White, O., Harris, C., Liem, A., and Lambert, P. Tolerance or Immunity to a Tumor Antigen Expressed in Somatic Cells Can Be Determined by Systemic Proinflammatory Signals at the Time of First Antigen Exposure. J. Immunol., 167: 6180-6187, 2001.

Gaal, T., Ross, W., Estrem, S. T., Nguyen, L. H., Burgess, R. R., and Gourse, R. L. Promoter Recognition and Discrimination by EsS RNA Polymerase. Mol. Microbiol., 42: 939-954, 2001.

Grabski, A. C., and Burgess, R. R. Preparation of Protein Samples for SDS-Polyacrylamide Gel Electrophoresis: Procedures and Tips. InNovations, 13: 10-12, 2001.

Graveel, C. R., Jatkoe, T., Madore, S. J., Holt, A. L., and Farnham, P. J. Expression Profiling and Identification of Novel Genes in Hepatocellular Carcinomas. Oncogene, 20: 2704-2712, 2001.

Gruber, T. M., Markov, D., Sharp, M. M., Young, B. A., Lu, C. Z., Zhong, H. J., Artsimovitch, I., Geszvain, K. M., Arthur, T. M., Burgess, R. R., Landick, R., Severinov, K., and Gross, C. A. Binding of the Initiation Factor s70 to Core RNA Polymerase Is a Multistep Process. Mol. Cell, 8: 21-31, 2001.

Hall, D. M., Sattler, G. L., Sattler, C. A., Zhang, H. J., Oberley, L. W., Pitot, H. C., and Kregel, K. C. Aging Lowers Steady-State Antioxidant Enzyme and Stress Protein Expression in Primary Hepatocytes. J. Gerontol.: Biol. Sci., 56A: B259-B267, 2001.

Hubbard, P. A., Shen, A. L., Paschke, R., Kasper, C. B., and Kim, J.-J. P. NADPH-Cytochrome P450 Oxidoreductase. Structural Basis for Hydride and Electron Transfer. J. Biol. Chem., 276: 29163-29170, 2001.

Kaykas, A., Worringer, K., and Sugden, B. CD40 and LMP-1 Both Signal from Lipid Rafts But LMP-1 Assembles a Distinct, More Efficient Signaling Complex. EMBO J., 20: 2641-2654, 2001.

Kel, A. E., Kel-Margoulis, O. V., Farnham, P. J., Bartley, S. M., Wingender, E., and Zhang, M. Q. Computer-assisted Identification of Cell Cycle-related Genes: New Targets for E2F Transcription Factors. J. Mol. Biol., 309: 99-120, 2001.

Kirchmaier, A. L. Analysis of Replication of oriP-Based Plasmids by Quantitative, Competitive PCR. Methods Mol. Biol., 174: 13-22, 2001.

Kirchmaier, A. L. Introduction of Plasmid Vectors into Cells Via Electroporation. Methods Mol. Biol., 174: 137-145, 2001.

Kraus, R. J., and Mertz, J. E. Cell-Free Transcription of SV40. Methods Mol. Biol., 165: 69-85, 2001.

Kraus, R. J., and Mertz, J. E. Quantitation and Structural Analysis of SV40 RNAs. Methods Mol. Biol., 165: 87-101, 2001.

Kraus, R. J., Mirocha, S. J., Stephany, H. M., Puchalski, J. R., and Mertz, J. E. Identification of a Novel Element Involved in Regulation of the Lytic Switch BZLF1 Gene Promoter of Epstein-Barr Virus. J. Virol., 75: 867-877, 2001.

Kraus, R. J., Shadley, L., and Mertz, J. E. Nuclear Factor 1 Family Members Mediate Repression of the BK Virus Late Promoter. Virology, 287: 89-104, 2001.

Lan, H., Kendziorski, C. M., Haag, J. D., Shepel, L. A., Newton, M. A., and Gould, M. N. Genetic Loci Controlling Breast Cancer Susceptibility in the Wistar-Kyoto Rat. Genetics, 157: 331-339, 2001.

Lee, W.-M., Ishikawa, M., and Ahlquist, P. Mutation of Host D9 Fatty Acid Desaturase Inhibits Brome Mosaic Virus RNA Replication between Template Recognition and RNA Synthesis. J. Virol., 75: 2097-2106, 2001.

Leight, E. R., and Sugden, B. Establishment of an oriP Replicon Is Dependent upon an Infrequent, Epigenetic Event. Mol. Cell. Biol., 21: 4149-4161, 2001.

Leight, E. R., and Sugden, B. The cis-Acting Family of Repeats Can Inhibit as well as Stimulate Establishment of an oriP Replicon. J. Virol., 75: 10709-10720, 2001.

Loeb, D. D., and Tian, R. Mutations That Increase In Situ Priming Also Decrease Circularization for Duck Hepatitis B Virus. J. Virol., 75: 6492-6497, 2001.

Maser, R. S., Mirzoeva, O. K., Wells, J., Olivares, H., Williams, B. R., Zinkel, R. A., Farnham, P. J., and Petrini, J. H. J. Mre11 Complex and DNA Replication: Linkage to E2F and Sites of DNA Synthesis. Mol. Cell. Biol., 21: 6006-6016, 2001.

Mendrysa, S. M., McElwee, M. K., and Perry, M. E. Characterization of the 5' and 3' Untranslated Regions in Murine mdm2 mRNAs. Gene, 264: 139-146, 2001.

Michalowski, J., Seavey, S. E., Mendrysa, S. M., and Perry, M. E. Defects in Transcription Coupled Repair Interfere with Expression of p90MDM2 in Response to Ultraviolet Light. Oncogene, 20: 5856-5864, 2001.

Miller, D. J., Schwartz, M. D., and Ahlquist, P. Flock House Virus RNA Replicates on Outer Mitochondrial Membranes in Drosophila Cells. J. Virol., 75: 11664-11676, 2001.

Ou, Y. C., Conolly, R. B., Thomas, R. S., Xu, Y., Andersen, M. E., Chubb, L. S., Pitot, H. C., and Yang, R. S. H. A Clonal Growth Model: Time-course Simulations of Liver Foci Growth following Penta- or Hexachlorobenzene Treatment in a Medium-term Bioassay. Cancer Res., 61: 1879-1889, 2001.

Pellecchia, M., Meininger, D., Shen, A. L., Jack, R., Kasper, C. B., and Sem, D. S. SEA-TROSY (Solvent Exposed Amides with TROSY): A Method to Resolve the Problem of Spectral Overlap in Very Large Proteins. J. Am. Chem. Soc., 123: 4633-4634, 2001.

Pitot, H. C. Animal Models of Neoplastic Development. Dev. Biol., 106: 53-59, 2001.

Pitot, H. C. Pathways of Progression in Hepatocarcinogenesis. Lancet, 358: 859-860, 2001.

Pitot III, H. C., and Dragan, Y. P. Chemical Carcinogenesis. In: C. D. Klaassen (Ed.), Casarett and Doull's Toxicology. The Basic Science of Poisons, Sixth Ed., Chapter 8, pp. 241-319. New York, NY: McGraw-Hill Medical Publishing Division, 2001.

Ross, J., Lemm, I., and Berberet, B. Overexpression of an mRNA-binding Protein in Human Colorectal Cancer. Oncogene, 20: 6544-6550, 2001.

Sakuragi, J.-I., Shioda, T., and Panganiban, A. T. Duplication of the Primary Encapsidation and Dimer Linkage Region of Human Immunodeficiency Virus Type 1 RNA Results in the Appearance of Monomeric RNA in Virions. J. Virol., 75: 2557-2565, 2001.

Sektas, M., Hasan, N., and Szybalski, W. Expression Plasmid with a Very Tight Two-Step Control: Int/att-mediated Gene Inversion with Respect to the Stationary Promoter. Gene, 267: 213-220, 2001.

Simmen, K. A., Singh, J., Luukkonen, B. G. M., Lopper, M., Bittner, A., Miller, N. E., Jackson, M. R., Compton, T., and Früh, K. Global Modulation of Cellular Transcription by Human Cytomegalovirus Is Initiated by Viral Glycoprotein B. Proc. Natl. Acad. Sci. USA, 98: 7140-7145, 2001.

Snitkovsky, S., Niederman, T. M. J., Mulligan, R. C., and Young, J. A. T. Targeting Avian Leukosis Virus Subgroup A Vectors by Using a TVA-VEGF Bridge Protein. J. Virol., 75: 1571-1575, 2001.

Sugden, B. Howard M. Temin: December 10, 1934-February 9, 1994. A Biographical Memoir. In: National Academy of Sciences, Biographical Memoirs, Vol. 79, pp. 336-374. Washington, D.C.: The National Academies Press, 2001. http://www.nap.edu/html/biomems/htemin.html

Sugden, B., and Leight, E. R. EBV's Plasmid Replicon: An Enigma in cis and trans. Curr. Top. Microbiol. Immunol., 258: 3-11, 2001.

Sugden, B., and Takada, K. Epstein-Barr Virus and Human Cancer: Hokkaido University, July 4-6, 2001. Jpn. J. Cancer Res., 92: 1352-1354, 2001.

Szybalski, W.  Ludzki klon lub opóznione blizniak (Human Clone or a Delayed Twin)?  Med Wieku Rozwoj, 5(1 Suppl 1):  39-43, 2001.  (In Polish)

Szybalski, W. Perspectives: My Road to Øjvind Winge, the Father of Yeast Genetics. Genetics, 158: 1-6, 2001.

Theiler, R. N., and Compton, T. Characterization of the Signal Peptide Processing and Membrane Association of Human Cytomegalovirus Glycoprotein O. J. Biol. Chem., 276: 39226-39321, 2001.

Thomas, R. S., Rank, D. R., Penn, S. G., Zastrow, G. M., Hayes, K. R., Pande, K., Glover, E., Silander, T., Craven, M. W., Reddy, J. K., Jovanovich, S. B., and Bradfield, C. A. Identification of Toxicologically Predictive Gene Sets using cDNA Microarrays. Mol. Pharmacol., 60: 1189-1194, 2001.

Thompson, N. E., and Burgess, R. R. Identification of Polyol-Responsive Monoclonal Antibodies for Use in Immunoaffinity Chromatography. Current Protocols in Molecular Biology, Section VI, Suppl. 54: 11.18.1-11.18.9, 2001.

Tindle, R. W., Herd, K., Doan, T., Bryson, G., Leggatt, G. R., Lambert, P., Frazer, I. H., and Street, M. Nonspecific Down-Regulation of CD8+ T-Cell Responses in Mice Expressing Human Papillomavirus Type 16 E7 Oncoprotein from the Keratin-14 Promoter. J. Virol., 75: 5985-5997, 2001.

Verma, M., Lambert, P. F., and Srivastava, S. K. Meeting highlights: National Cancer Institute workshop on Molecular Signatures of Infectious Agents. Dis. Markers, 17: 191-201, 2001.

Weinmann, A. S., Bartley, S. M., Zhang, T., Zhang, M. Q., and Farnham, P. J. Use of Chromatin Immunoprecipitation To Clone Novel E2F Target Promoters. Mol. Cell. Biol., 21: 6820-6832, 2001.

Young, B. A., Anthony, L. C., Gruber, T. M., Arthur, T. M., Heyduk, E., Lu, C. Z., Sharp, M. M., Heyduk, T., Burgess, R. R., and Gross, C. A. A Coiled-Coil from the RNA Polymerase b' Subunit Allosterically Induces Selective Nontemplate Strand Binding by s70. Cell, 105: 935-944, 2001.

Yu, X., and Mertz, J. E. Critical Roles of Nuclear Receptor Response Elements in Replication of Hepatitis B Virus. J. Virol., 75: 11354-11364, 2001.

Zhu, M., and Fahl, W. E. Functional Characterization of Transcription Regulators That Interact with the Electrophile Response Element. Biochem. Biophys. Res. Commun., 289: 212-219, 2001.

Zhu, M., Chapman, W. G., Oberley, M. J., Wasserman, W. W., and Fahl, W. E. Polymorphic Electrophile Response Elements in the Mouse Glutathione S-Transferase GSTa1 Gene That Confer Increased Induction. Cancer Lett., 164: 113-118, 2001.

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