2013 McArdle Publications

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Albright, E. R., and Kalejta, R. F.  Myeloblastic Cell Lines Mimic Some But Not All Aspects of Human Cytomegalovirus Experimental Latency Defined in Primary CD34+ Cell Populations.  J. Virol., 87(17): 9802-9812, 2013.

Anderson, S. A., Nizzi, C. P., Chang, Y.-I., Deck, K. M., Schmidt, P. J., Galy, B., Damnernsawad, A., Broman, A. T., Kendziorski, C., Hentze, M. W., Fleming, M. D., Zhang, J., and Eisenstein, R. S.  The IRP1-HIF-2α Axis Coordinates Iron and Oxygen Sensing with Erythropoiesis and Iron Absorption.  Cell Metab., 17(2):  282-290, 2013.

Banta, A. B., Chumanov, R. S., Yuan, A. H., Lin, H., Campbell, E. A., Burgess, R. R., and Gourse, R. L.  Key Features of σs Required for Specific Recognition by Crl, a Transcription Factor Promoting Assembly of RNA Polymerase Holoenzyme.  Proc. Natl. Acad. Sci. USA, 110(40):  15955-15960, 2013.

Bhatia, N., Xiao, T. Z., Rosenthal, K. A., Siddiqui, I. A., Thiyagarajan, S., Smart, B., Meng, Q., Zuleger, C. L., Mukhtar, H., Kenney, S. C., Albertini, M. R., and Longley, B. J.  MAGE-C2 Promotes Growth and Tumorigenicity of Melanoma Cells, Phosphorylation of KAP1, and DNA Damage Repair.  J. Invest. Dermatol., 133(3): 759-767, 2013.

Bruce, J. W., Reddington, R., Mathieu, E., Bracken, M., Young, J. A. T., and Ahlquist, P.  ZASC1 Stimulates HIV-1 Transcription Elongation by Recruiting P-TEFb and TAT to the LTR Promoter.  PLoS Pathog., 9(10): e1003712, 2013.

Burgess, R. R.  In Memoriam:  Recollections of John Dunn (1944-2012).  Protein Expr. Purif., 87(1):  3-4, 2013.

Chiu, Y.-F., Sugden, A. U., and Sugden, B.  Epstein-Barr Viral Productive Amplification Reprograms Nuclear Architecture, DNA Replication, and Histone Deposition.  Cell Host Microbe, 14(6):  607-618, 2013.

Choyce, A., Yong, M., Narayan, S., Mattarollo, S. R., Liem, A., Lambert, P. F., Frazer, I. H., and Leggatt, G. R.  Expression of a Single, Viral Oncoprotein in Skin Epithelium Is Sufficient to Recruit Lymphocytes.  PLoS One, 8(2):e57798, 2013.

Chung, S.-H., Shin, M. K., Korach, K. S., and Lambert, P. F.  Requirement for Stromal Estrogen Receptor Alpha in Cervical Neoplasia.  Horm. Cancer, 4(1): 50-59, 2013.

Copp, R. R., Peebles, D. D., Soref, C. M., and Fahl, W. E.  Radioprotective Efficacy and Toxicity of a New Family of Aminothiol Analogs.  Int. J. Radiat. Biol., 89(7): 485-492, 2013.

Cortés-Malagón, E. M., Bonilla-Delgado, J., Díaz-Chávez, J., Hidalgo-Miranda, A., Romero-Cordoba, S., Üren, A., Çelik, H., McCormick, M., Munguía-Moreno, J. A., Ibarra-Sierra, E., Escobar-Herrera, J., Lambert, P. F., Mendoza-Villanueva, D., Bermudez-Cruz, R. M., and Gariglio, P.  Gene Expression Profile Regulated by the HPV16 E7 Oncoprotein and Estradiol in Cervical Tissue.  Virology, 447(1-2):  155-165, 2013.

Ding, L., Zhao, Y., Warren, C. L., Sullivan, R., Eliceiri, K. W., and Shull, J. D.  Association of Cellular and Molecular Responses in the Rat Mammary Gland to 17β-Estradiol with Susceptibility to Mammary Cancer.  BMC Cancer, 13(1):573, 2013.

Dove, W., and Shedlovsky, A.  From MRC-Cambridge to Madison, Wisconsin.  In:  Memories and Consequences:  Visiting Scientists at the MRC Laboratory of Molecular Biology, Cambridge.  Cambridge, UK:  Medical Research Council, 2013.

Du, J., Liu, Y., Meline, B., Kong, G., Tan, L. X., Lo, J. C., Wang, J., Ranheim, E., Zhang, L., Chang, Y. I., Ryu, M. J., Zhang, J. F., and Zhang, J.  Loss of CD44 Attenuates Aberrant GM-CSF Signaling in Kras G12D Hematopoietic Progenitor/Precursor Cells and Prolongs the Survival of Diseased Animals.  Leukemia, 27(3): 754-757, 2013.

Duan, J., Shi, J., Ge, X., Dölken, L., May, W., He, D., Shi, S., Sanders, A. R., Ross, J., and Gejman, P. V.  Genome-Wide Survey of Interindividual Differences of RNA Stability in Human Lymphoblastoid Cell Lines.  Sci. Rep., 3:1318, 2013.

Duarte, M., Wang, L., Calderwood, M. A., Adelmant, G., Ohashi, M., Roecklein-Canfield, J., Marto, J. A., Hill, D. E., Deng, H., and Johannsen, E.  An RS Motif within the Epstein-Barr Virus BLRF2 Tegument Protein Is Phosphorylated by SRPK2 and Is Important for Viral Replication.  PLoS One, 8(1):e53512, 2013.

Gao, X., Johnson, K. D., Chang, Y.-I., Boyer, M. E., Dewey, C. N., Zhang, J., and Bresnick, E. H.  Gata2 cis-Element Is Required for Hematopoetic Stem Cell Generation in the Mammalian Embryo.  J. Exp. Med., 210(13): 2833-2842, 2013.

Giménez-Barcons, M., Alves-Rodrigues, I., Jungfleisch, J., Van Wynsberghe, P. M., Ahlquist, P., and Díez, J.  The Cellular Decapping Activators LSm1, Pat1, and Dhh1 Control the Ratio of Subgenomic to Genomic Flock House Virus RNAs.  J. Virol., 87(11): 6192-6200, 2013.

Goodman, C. A., McNally, R. M., Hoffmann, F. M., and Hornberger, T. A.  Smad3 Induces Atrogin-1, Inhibits mTOR and Protein Synthesis, and Promotes Muscle Atrophy in Vivo.  Mol. Endocrinol., 27(11): 1946-1957, 2013.

Hammerschmidt, W., and Sugden, B.  Replication of Epstein-Barr Viral DNA.  Cold Spring Harb. Perspect. Biol., 5(1):  pii: a013029, 2013.

Hao, L., He, Q., Wang, Z., Craven, M., Newton, M. A., and Ahlquist, P.  Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors.  PLoS Comput. Biol., 9(9):e1003235, 2013.

Harkness, T., Weaver, B. A., Alexander C. M., and Ogle, B. M.  Cell Fusion in Tumor Development:  Accelerated Genetic Evolution.  Crit. Rev. Oncog., 18(1-2):  19-42, 2013.

Hebron, E., Hope, C., Kim, J., Jensen, J. L., Flanagan, C., Bhatia, N., Maroulakou, I., Mitsiades, C., Miyamoto, S., Callander, N., Hematti, P., and Asimakopoulos, F.  MAP3K8 Kinase Regulates Myeloma Growth by Cell-Autonomous and Non-Autonomous Mechanisms Involving Myeloma-Associated Monocytes/Macrophages.  Brit. J. Haematol., 160(6): 779-784, 2013.

Hernández-Monge, J., Garay, E., Raya-Sandino, A., Vargas-Sierra, O., Díaz-Chávez, J., Popoca-Cuaya, M., Lambert, P. F., González-Mariscal, L., and Gariglio, P.  Papillomavirus E6 Oncoprotein Up-Regulates Occludin and Z0-2 Expression in Ovariectomized Mice Epidermis.  Exp. Cell Res., 319(17):  2588-2603, 2013.

Ivancic, M. M., Huttlin, E. L., Chen, X., Pleiman, J. K., Irving, A. A., Hegeman, A. D., Dove, W. F., and Sussman, M. R.  Candidate Serum Biomarkers for Early Intestinal Cancer Using 15N Metabolic Labeling and Quantitative Proteomics in the ApcMin/+ Mouse.  J. Proteome Res., 12(9): 4152-4166, 2013.

Jackson, S. S., Coughlin, E. E., Coon, J. J., and Miyamoto, S.  Identifying Post-Translational Modifications of NEMO by Tandem Mass Spectrometry After High Affinity Purification.  Prot. Expr. Purif., 92(1): 48-53, 2013.

Jiang, L., Stanevich, V., Satyshur, K. A., Kong, M., Watkins, G. R., Wadzinski, B. E., Sengupta, R., and Xing, Y.  Structural Basis of Protein Phosphatase 2A Stable Latency.  Nat. Commun., 4:1699, 2013.

Johannsen, E., and Lambert, P. F.  Epigenetics of Human Papillomaviruses.  Virology, 445(1-2): 205-212, 2013.

Kalejta, R. F.  Pre-Immediate Early Tegument Protein Functions.  In:  M. J. Reddehase (Ed.), Cytomegaloviruses:  From Molecular Pathogenesis to Intervention, Volume 1, Chapter 9, pp. 141-151.  Norfolk, UK:  Caister Academic Press, 2013.

Kimple, R. J., Harari, P. M., Torres, A. D., Yang, R. Z., Soriano, B. J., Yu, M., Armstrong, E. A., Blitzer, G. C., Smith, M. A., Lorenz, L. D., Lee, D., Yang, D. T., McCulloch, T. M., Hartig, G. K., and Lambert, P. F.  Development and Characterization of HPV-Positive and HPV-Negative Head and Neck Squamous Cell Carcinoma Tumorgrafts.  Clin. Cancer Res., 19(4): 855-864, 2013.

Kimple, R. J., Smith, M. A., Blitzer, G. C., Torres, A. D., Martin, J. A., Yang, R. Z., Peet, C. R., Lorenz, L. D., Nickel, K. P., Klingelhutz, A. J., Lambert, P. F., and Harari, P. M.  Enhanced Radiation Sensitivity in HPV-Positive Head and Neck Cancer.  Cancer Res., 73(15): 4791-4800, 2013. 

Kong, G., Du, J., Liu, Y., Meline, B., Chang, Y.-I., Ranheim, E. A., Wang, J., and Zhang, J.  Notch1 Gene Mutations Target KRAS G12D-expressing CD8+ Cells and Contribute to Their Leukemogenic Transformation.  J. Biol. Chem., 288(25): 18219-18227, 2013.

Lambert, P. F., McBride, A., and Ulrich Bernard, H.  The Papillomavirus Episteme.  Virology (Special Issue), 445(1-2): 1, 2013.

Lang, J. D., Berry, S. M., Powers, G. L., Beebe, D. J., and Alarid, E. T.  Hormonally Responsive Breast Cancer Cells in a Microfluidic Co-Culture Model as a Sensor of Microenvironmental Activity.  Integr. Biol. (Camb.), 5(5): 807-816, 2013.

Leng, N., Dawson, J. A., Thomson, J. A., Ruotti, V., Rissman, A. I., Smits, B. M. G., Haag, J. D., Gould, M. N., Stewart, R. M., and Kendziorski, C.  EBSeq:  An Empirical Bayes Hierarchical Model for Inference in RNA-Seq Experiments.  Bioinformatics, 29(8): 1035-1043, 2013.

Lockridge, J. L., Zhou, Y., Becker, Y. A., Ma, S., Kenney, S. C., Hematti, P., Capitini, C. M., Burlingham, W. J., Gendron-Fitzpatrick, A., and Gumperz, J. E.  Mice Engrafted with Human Fetal Thymic Tissue and Hematopoietic Stem Cells Develop Pathology Resembling Chronic Graft-versus-Host Disease.  Biol. Blood Marrow Transplant., 19(9): 1310-1322, 2013.

Lorenz, L. D., Rivera Cardona, J., and Lambert, P. F.  Inactivation of p53 Rescues the Maintenance of High Risk HPV DNA Genomes Deficient in Expression of E6.  PLoS Pathog., 9(10): e1003717, 2013.

McNairn, A. J., Doucet, Y., Demaude, J., Brusadelli, M., Gordon, C. B., Uribe-Rivera, A., Lambert, P. F., Bouez, C., Breton, L., and Guasch, G.  TGFβ Signaling Regulates Lipogenesis in Human Sebaceous Glands Cells.  BMC Dermatol., 13(1): 2, 2013.

Michael, S., Lambert, P. F., and Strati, K.  The HPV16 Oncogenes Cause Aberrant Stem Cell Mobilization.  Virology, 443(2): 218-225, 2013.

Mulero, M. C., Ferres-Marco, D., Islam, A., Margalef, P., Pecoraro, M., Toll, A., Drechsel, N., Charneco, C., Davis, S., Bellora, N., Gallardo, F., López-Arribillaga, E., Asensio-Juan, E., Rodilla, V., González, J., Iglesias, M., Shih, V., Albà, M. M., Di Croce, L., Hoffmann, A., Miyamoto, S., Villà-Freixa, J., López-Bigas, N., Keyes, W. M., Domínguez, M., Bigas, A., and Espinosa, L.  Chromatin-Bound IκBα Regulates a Subset of Polycomb Target Genes in Differentiation and Cancer.  Cancer Cell, 24(2):  151-166, 2013.

Ozawa, M., Shimojima, M., Goto, H., Watanabe, S., Hatta, Y., Kiso, M., Furuta, Y., Horimoto, T., Peters, N. R., Hoffmann, F. M., and Kawaoka, Y.  A Cell-Based Screening System for Influenza A Viral RNA Transcription/Replication Inhibitors.  Sci. Rep., 3:1106, 2013.

Pak, C., and Miyamoto, S.  A New Alpha in Line Between KRAS and NF-κB Activation?  Cancer Discov., 3(6):  613-615, 2013.

Park, J. W., Shin, M.-K., Pitot, H. C., and Lambert, P. F.  High Incidence of HPV-Associated Head and Neck Cancers in FA Deficient Mice Is Associated with E7’s Induction of DNA Damage through Its Inactivation of Pocket Proteins.  PLoS One, 8(9):e75056, 2013.

Penkert, R. R., and Kalejta, R. F.  Human Embryonic Stem Cell Lines Model Experimental Human Cytomegalovirus Latency.  mBio, 4(3):e00298-13, 2013.

Powers, G. L., Rajbhandari, P., Solodin, N. M., Bickford, B., and Alarid, E. T.  The Proteasome Inhibitor Bortezomib Induces an Inhibitory Chromatin Environment at a Distal Enhancer of the Estrogen Receptor-α Gene.  PLoS One, 8(12):e81110, 2013.

Qin, Q., Penkert, R. R., and Kalejta, R. F.  Heterologous Viral Promoters Incorporated Into the Human Cytomegalovirus Genome Are Silenced during Experimental Latency.  J. Virol., 87(17): 9886-9894, 2013.

Raver, R. M., Panfil, A. R., Hagemeier, S. R., and Kenney, S. C.  The B-Cell-Specific Transcription Factor and Master Regulator Pax5 Promotes Epstein-Barr Virus Latency by Negatively Regulating the Viral Immediate Early Protein BZLF1.  J. Virol., 87(14): 8053-8063, 2013.

Rivera, C., Simonson, S. J., S., Yamben, I. F., Shatadal, S., Nguyen, M. M., Beurg, M., Lambert, P. F., and Griep, A. E.  Requirement for Dlgh-1 in Planar Cell Polarity and Skeletogenesis during Vertebrate Development.  PLoS One, 8(1):e54410, 2013.

Schaffer, B. S., Leland-Wavrin, K. M., Kurz, S. G., Colletti, J. A., Seiler, N. L., Warren, C. L., and Shull, J. D.  Mapping of Three Genetic Determinants of Susceptibility to Estrogen-Induced Mammary Cancer within the Emca8 Locus on Rat Chromosome 5.  Cancer Prev. Res., 6(1): 59-69, 2013.

Seidel, S., Bruce, J., Leblanc, M., Lee, K.-F., Fan, H., Ahlquist, P., and Young, J. A. T.  ZASC1 Knockout Mice Exhibit an Early Bone Marrow-Specific Defect in Murine Leukemia Virus Replication.  Virol. J., 10(1): 130, 2013.

Shanle, E. K., Zhao, Z., Hawse, J., Wisinski, K., Keles, S., Yuan, M., and Xu, W. Research Resource:  Global Identification of Estrogen Receptor β Target Genes in Triple Negative Breast Cancer Cells.  Mol. Endocrinol., 27(10):  1762-1775, 2013.

Sherer, N. M.  Long-Distance Relationships:  Do Membrane Nanotubes Regulate Cell-Cell Communication and Disease Progression?  Mol. Biol. Cell., 24(8):  1095-1098, 2013.

Sievers, C. K., Shanle, E. K., Bradfield, C. A., and Xu, W.  Differential Action of Monohydroxylated Polycyclic Aromatic Hydrocarbons with Estrogen Receptors α and β.  Toxicol. Sci., 132(2): 359-367, 2013.

Smits, B. M. G., Haag, J. D., Rissman, A. I., Sharma, D., Tran, A., Schoenborn, A. A., Baird, R. C., Peiffer, D. S., Leinweber, D. Q., Muelbl, M. J., Meilahn, A. L., Eichelberg, M. R., Leng, N., Kendziorski, C., John, M. C., Powers, P. A., Alexander, C. M., and Gould M. N.  The Gene Desert Mammary Carcinoma Susceptibility Locus Mcs1a Regulates Nr2f1 Modifying Mammary Epithelial Cell Differentiation and Proliferation.  PLoS Genet., 9(6):e1003549, 2013.

Spurgeon, M. E., and Lambert, P. F.  Merkel Cell Polyomavirus:  A Newly Discovered Human Virus with Oncogenic Potential.  Virology, 435(1):  118-130, 2013. 

Sun, X.,  Bristol, J. A., Iwahori, S., Hagemeier, S. R., Meng, Q., Barlow, E. A., Fingeroth, J. D., Tarakanova, V. L., Kalejta, R. F., and Kenney, S. C.  Hsp90 Inhibitor 17-DMAG Decreases Expression of Conserved Herpesvirus Protein Kinases and Reduces Virus Production in Epstein-Barr Virus-Infected Cells.  J. Virol., 87(18): 10126-10138, 2013.

Szybalski, W.  The 50th Anniversary of Gene Therapy:  Beginnings and Present Realities.  Gene, 525(2): 151-154, 2013. 

Tan, Z., Maguire, M. L., Loeb, D. D., and Zlotnick, A.  Genetically Altering the Thermodynamics and Kinetics of Hepatitis B Virus Capsid Assembly Has Profound Effects on Virus Replication in Cell Culture.  J. Virol., 87(6): 3208-3216, 2013.

van Heesch, S., Mokry, M., Boskova, V., Junker, W., Mehon, R., Toonen, P., de Bruijn, E., Shull, J. D., Aitman, T. J., Cuppen, E., and Guryev, V.  Systematic Biases in DNA Copy Number Originate from Isolation Procedures.  Genome Biol., 14(4):R33, 2013. 

Wang, J., Kong, G., Liu, Y., Du, J., Chang, Y.-I., Tey, S. R., Zhang, X., Ranheim, E. A., Saba-El-Leil, M. K., Meloche, S., Damnernsawad, A., Zhang, J., and Zhang, J.  NrasG12D/+ Promotes Leukemogenesis by Aberrantly Regulating Hematopoietic Stem Cell Functions.  Blood, 121(26): 5203-5207, 2013.

Wang, L., Charoensuksai, P., Watson, N. J., Wang, X., Zhao, Z., Coriano, C. G., Kerr, L. R., and Xu, W.  CARM1 Automethylation Is Controlled at the Level of Alternative Splicing.  Nucleic Acids Res., 41(14): 6870-6880, 2013.

Washington, M. K., Powell, A. E., Sullivan, R., Sundberg, J. P., Wright, N., Coffey, R. J., and Dove, W. F.  Pathology of Rodent Models of Intestinal Cancer:  Progress Report and Recommendations.  Gastroenterology, 144(4): 705-717, 2013.

Westhoff Smith, D., and Sugden, B.  Potential Cellular Functions of Epstein-Barr Nuclear Antigen 1 (EBNA1) of Epstein-Barr Virus.  Viruses, 5(1):  226-240, 2013.

Wille, C. K., Nawandar, D. M., Panfil, A. R., Ko, M. M., Hagemeier, S. R., and Kenney, S. C.  Viral Genome Methylation Differentially Affects the Ability of BZLF1 versus BRLF1 to Activate Epstein-Barr Virus Lytic Gene Expression and Viral Replication.  J. Virol., 87(2): 935-950, 2013.

Winkler, L. L., Hwang, J., and Kalejta, R. F.  Ubiquitin-Independent Proteasomal Degradation of Tumor Suppressors by Human Cytomegalovirus pp71 Requires the 19S Regulatory Particle.  J. Virol., 87(8): 4665-4671, 2013.

Wlodarchak, N., Guo, F., Satyshur, K. A., Jiang, L., Jeffrey, P. D., Sun, T., Stanevich, V., Mumby, M. C., and Xing, Y.  Structure of the Ca2+-Dependent PP2A Heterotrimer and Insights into Cdc6 Dephosphorylation.  Cell Res., 23(7): 931-946, 2013.

Yarger, J. G., Babine, R. E., Bittner, M., Shanle, E., Xu, W., Hershberger, P., and Nye, S. H.  Structurally Similar Estradiol Analogs Uniquely Alter the Regulation of Intracellular Signaling Pathways.  J. Mol. Endocrinol., 50(1):  43-57, 2013.

Zeng, H., Wu, J., Bedford, M. T., Sbardella, G., Hoffmann, F. M., Bi, K., and Xu, W.  A TR-FRET-Based Functional Assay for Screening Activators of CARM1.  ChemBioChem, 14(7): 827-835, 2013.

Zhao, Z., Wang, L., Wen, Z., Ayaz-guner, S., Wang, Y., Ahlquist, P., and Xu, W.  Systematic Analyses of the Cytotoxic Effects of Compound 11a, a Putative Synthetic Agonist of Photoreceptor-Specific Nuclear Receptor (PNR), in Cancer Cell Lines.  PLoS One, 8(9):e75198, 2013.